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CONTENTS

Journal Articles (ISI)

    2008

  1. M. Schaer, M. Bach Cuadra, L. Tamarit, F. Lazeyras, S. Eliez and J.-P. Thiran, "A Surface-based approach to Quantify Local Cortical Gyrification", IEEE Transactions on Medical Imaging, in press.
  2. J. Verhaeghe, D. Van De Ville, I. Khalidov, Y. D'Asseler, I. Lemahieu, M. Unser, "Dynamic PET Reconstruction Using Wavelet Regularization with Adapted Basis Function", IEEE Transactions on Medical Imaging, in press.
  3. R. Enterazi, D. Van De Ville, T. Moeller, "Practical Box Splines for Reconstruction on the Body Centered Cubic Lattice", IEEE Transactions on Visualization and Computer Graphics, in press.
  4. 2007

  5. T. Blu, F. Luisier, "The SURE-LET Approach to Image Denoising", IEEE Transactions on Image Processing, vol. 16, no. 11, pp. 2778-2786, November 2007.
  6. D. Van De Ville, M. Seghier, F. Lazeyras, T. Blu, M. Unser, "WSPM: Wavelet-based Statistical Parametric Mapping", NeuroImage, vol. 37, no. 4, pp. 1205-1217, October 1, 2007.
  7. I. Khalidov, D. Van De Ville, M. Jacob, F. Lazeyras, M. Unser, "BSLIM: Spectral Localization by Imaging with Explicit B0 Field Inhomogeneity Compensation", IEEE Transactions on Medical Imaging, vol. 26, no. 7, pp. 990-1000, July 2007.
  8. P. Hagmann, M. Kurant, X. Gigandet, P. Thiran, V.J. Wedeen, R. Meuli, J.-Ph. Thiran, "Mapping Human Whole-Brain Structural Networks with Diffusion MRI", PLoS ONE, vol. 2, no. 7, pp. e597, 2007.
  9. D. Zosso, M. Bach Cuadra, J.-Ph. Thiran, "Direct Fourier Tomographic Reconstruction Image-To-Filter Filter&34;, The Insight Journal, vol. July-December, 2007.
  10. L. Condat, D. Van De Ville, "Quasi-Interpolating Spline Models for Hexagonally-Sampled Data&34;, IEEE Transactions on Image Processing, vol. 16, no. 5, pp. 1195-1206, May 2007.
  11. F. Luisier, T. Blu, M. Unser, "A New SURE Approach to Image Denoising: Interscale Orthonormal Wavelet Thresholding&34;, IEEE Transactions on Image Processing, vol. 16, no. 3, pp. 593-606, March 2007.
  12. P. Thevenaz, M. Unser, "User-Friendly Semi-automated Assembly of Accurate Image Mosaics in Microscopy", Microscopy Research and Technique, vol. 70, no. 2, pp. 135-146, February 2007.
  13. B. Bathellier, D. Van De Ville, T. Blu, M. Unser, A. Carleton, "Wavelet-Based Multi-Resolution Statistics for Optical Imaging Signals: Application to Automated Detection of Odour Activated Glomeruli in the Mouse Olfactory Bulb", NeuroImage, vol. 34, no. 3, pp. 1020-1035, February 1, 2007.
  14. 2006

  15. F. Sanchez Castro, C. Pollo, R. Meuli, P. Maeder, O. Cuisenaire, M. Bach Cuadra, J. Villemure and J. Thiran, "A Cross Validation Study of Deep Brain Stimulation Targeting: From Experts to Atlas-Based, Segmentation-Based and Automatic Registration Algorithms", IEEE Transactions on Medical Imaging, Special Issue on Validation in Medical Image Processing, vol. 25, no. 11, pp. 1440-1450, 2006.
  16. M. Bach Cuadra, M. De Craene, V. Duay, B. Macq, C. Pollo and J. Thiran, "Dense Deformation Field Estimation for Atlas-based Segmentation of Pathological MR Brain Images", Computer Methods and Programs in Biomedicine, Special Issue on Medical Image Segmentation, vol. 84, no. 2-3, pp. 66-75, 2006.
  17. P. Hagmann, L. Cammoun, R. Martuzzi, P. Maeder, S. Clarke, J. Thiran and R. Meuli, "Hand preference and sex shape the architecture of language networks", Human Brain Mapping, vol. 27, no. 10, pp. 828-835, 2006.
  18. R. Patel, D. Van De Ville, F. Dubois Bowman, ``Determining Significant Connectivity by 4D Spatiotemporal Wavelet Packet Resampling of Functional Neuroimaging Data,'' NeuroImage, vol. 31, no. 3, pp. 1142-1155, July 2006.
  19. D. Van De Ville, T. Blu, M. Unser, "Surfing the Brain: An Overview of Wavelet-Based Techniques for fMRI Data Analysis," IEEE Engineering in Medicine and Biology Magazine, vol. 25, no. 2, pp. 65-78, March-April 2006.
  20. 2005

  21. M. Bach Cuadra, L. Cammoun, T. Butz, O. Cuisenaire, J.-P. Thiran,"Comparison and Validation of Tissue Modelization and Statistical Classification Methods in T1-weighted MR Brain Images," IEEE Transactions on Medical Imaging, Vol. 24, No. 12, pp. 1548-1565, December 2005.

Other Journal Articles

    2007

  1. P. Hagmann, M. Kurant, X. Gigandet, P. Thiran, V.J. Wedeen, R. Meuli and J.-P. Thiran, "Mapping Human Whole-Brain Structural Networks with Diffusion MRI", PLoS ONE, Vol. 2, Nr. 7, pp. e597, 2007.
  2. D. Zosso, M. Bach Cuadra and J.-P. Thiran, "Direct Fourier Tomographic Reconstruction Image-To-Image Filter", The Insight Journal, Vol. July-December 2007.
  3. O. Johnsen, P. Crausaz, C. Magliocco, D. Pretre, F. Corthay, G. Maitre, M. Kocher, "Field Programmable Gate Arrays (FPGA) versus Digital Signal Processors (DSP)", Bulletin SEV/AES, pp. 23-26, March 2007.

Conferences

    2008

  1. D. Zosso, B. Le Callennec, M. Bach Cuadra, K. Aminian, B.M. Jolles and J.-P. Thiran, "Bi-planar 2D-to-3D Registration in Fourier Domain for Stereoscopic X-Ray Motion Tracking", SPIE Medical Imaging 2008, San Diego, California, USA, 16 - 21 February 2008.
  2. 2007

  3. R. Cardenes, M. Bach Cuadra, Y. Chi, I. Marras, R. de Luis, M. Anderson, P. Cashman and M. Bultelle, "Multimodal Evaluation for Medical Image Segmentation", Computer Analysis of Images and Patterns (CAIP), Vienna, Austria, August 2007.
  4. V. Duay, X. Bresson, N. Houhou, M. Bach Cuadra and J.-P. Thiran, "Registration of Multiple Regions Derived from the Optical Flow Model and the Active Contour Framework", 15th European Signal Processing Conference (EUSIPCO), Poznan, Poland, 2007.
  5. V. Duay, S. Luti, G. Menegaz and J.-P. Thiran, "ctive Contours and Information Theory for Supervised Segmentation on Scalar Images", 15th European Signal Processing Conference (EUSIPCO), Poznan, Poland, 2007.
  6. D. Van De Ville, B. Bathellier, A. Carleton, T. Blu, M. Unser, "Wavelet-based statistical analysis for optical imaging in mouse olfactory bulb", IEEE International Symposium on Biomedical Imaging (ISBI'07), Washington DC (WA), USA, April 2007.
  7. 2006

  8. V. Duay, M. Bach Cuadra, X. Bresson and J. Thiran, "Dense Deformation Field Estimation for Atlas Registration using the Active Contour Framework", European Signal Processing Conference (EUSIPCO), Florence, Italy, September 2006.
  9. D. Van De Ville, T. Blu, M. Unser, ``WSPM or how to obtain statistical parametric maps using shift-invariant wavelet processing,'' IEEE ICASSP, special session Advanced methods for mapping brain functions from functional MRI datasets, pp. V1101-V1104, Toulouse, France, May 2006.
  10. I. Khalidov, D. Van De Ville, M. Jacob, F. Lazeyras, M. Unser, ``Improved MRSI with field inhomogeneity compensation,'' SPIE Medical Imaging, vol. 6144, pp. 61442A-1-61442A-6, San Diego (CA), USA, February 2006.

Abstracts

    2007

  1. C. Gaser, M. Bach Cuadra, "Fast Segmentation Denoising Based on Markov Random Field Model", HBM 13th Annual Meeting of the Organization for Human Brain Meeting, June 2007, Chicago, USA.
  2. M. Schaer et al, "A New Surface-based Approach to Quantify Local Cortical Gyrification Applied to the Delineation of Gyral Anomalies in 22q11 Deletion Syndrome", HBM 13th Annual Meeting of the Organization for Human Brain Meeting, June 2007, Chicago, USA.
  3. X. Gigandet, P. Hagmann, M. Kurant, R. Meuli and J.-Ph. Thiran, "How much confidence do we have in a MRI tractography experiment?", ISMRM 15th Scientific Meeting, May 2007, Berlin, Germany.
  4. L. Cammoun, P. Hagmann, X.Gigandet, P. Maeder, J-Ph. Thiran, R. Meuli, "A method to study alterations in networks of structural connectivity", ISMRM 15th Scientific Meeting, May 2007, Berlin, Germany.
  5. P. Hagmann, X.Gigandet, L. Cammoun, V. Wedeen, P. Maeder, J-Ph. Thiran, R. Meuli, "Deriving scalar maps from Diffusion Spectrum MRI", ISMRM 15th Scientific Meeting, May 2007, Berlin, Germany.
  6. N. Just, N. Kunz, R. Charrier, HX. Lei, M. Bach Cuadra, R. Gruetter, J.-Ph. Thiran, "Bias Field Correction of surface coil MR images of rodent brain acquired at high field", ISMRM 15th Scientific Meeting, May 2007, Berlin, Germany.
  7. M. Schaer, M. Bach Cuadra, L. Tamarit, B. Glaser, M. Debbané, J.-Ph. Thiran, S. Eliez, "A Surface-based Approach to Quantify Local Cortical Gyrification in 22q11 Deletion Syndrome", 3rd Alpine Brain Imaging Meeting, January 14-18, 2007, Champéry, Switzerland.
  8. 2006

  9. M. Schaer, M. Bach Cuadra, L. Tamarit, J-Ph. Thiran, S. Eliez, "Determinants of cortical gray matter volume: hypothesis based on developmental cohorts with normal and abnormal cortical morphology", 3rd Annual Meeting of The Lemanic Neuroscience Programm, (Les Diablerets, Switzerland), September 2006.
  10. M. Schaer, M. Bach Cuadra, D. Gabriel Mounir, J. Glauser, M. Debbané, B. Glaser, S. Eliez, "Cortical thickness in 22q11 deletion syndrome: a MRI study", 5th International 22q11.2 Deletion Syndrome Conference, (Marseille, France), July 2006.
  11. L. Cammoun, P. Deppen, P. Bovet, M. Cuénod, P. Hagmann, R. Meuli, K. DO Cuénod and J. Thiran, ``Schizophrenia connectivity investigation by DTI Tractography,'' Twelfth Annual Meeting of the Organization for Human Brain Mapping, (Florence, Italy), June 2006.
  12. D. Viceic, R. Campos, M. Adriani, E. Fornari, R. Meuli, J.-Ph. Thiran, S. Clarke, ``Sound recognition and sound localisation after unilateral hemispheric lesions: role of the contralesional non-primary auditory areas,'' Twelfth Annual Meeting of the Organization for Human Brain Mapping, (Florence, Italy), June 2006.
  13. M. Schaer, M. Bach Cuadra, J.-Ph. Thiran, S. Eliez, "Determinants of cortical gray matter volume: hypothesis based on developmental cohorts with normal and abnormal cortical morphology", Twelfth Annual Meeting of the Organization for Human Brain Mapping, (Florence, Italy), June 2006.
  14. R. Patel, D. Van De Ville, F. Dubois Bowman, ``Determining Significant Connectivity by 4D Spatiotemporal Wavelet Packet Resampling of Functional Neuroimaging Data,'' Twelfth Annual Meeting of the Organization for Human Brain Mapping, (Florence, Italy), June 2006.
  15. D. Van De Ville, M. Seghier, F. Lazeyras, M. Pelizzone, T. Blu, M. Unser, ``SPM versus WSPM: Sensitivity and Specificity for Multi-Session fMRI Data,'' Twelfth Annual Meeting of the Organization for Human Brain Mapping (HBM'06), Florence, Italy, June 2006.
  16. P. Hagmann, M. Kurant, X. Gigandet, P. Thiran, V. Wedeen, R. Meuli and J-P. Thiran, "Imaging the brain neuronal network with Diffusion MRI: a way to understand its global architecture," International Society for Magnetic Resonance in Medicine (ISMRM), Seattle, USA, May 2006 .
  17. P. Hagmann, X. Gigandet, V. Wedeen, R. Meuli and J-P. Thiran, "Statistical DSI brain tractography: a way to handle the kiss-cross uncertainty," International Society for Magnetic Resonance in Medicine (ISMRM), Seattle, USA, May 2006 .
  18. M. Schaer, L. Tamarit, M. Bach Cuadra, F. Lazeyras, J.-Ph. Thiran, S. Eliez, "A new method for measuring cortical folding in a 3D space from MR images," Alpine Brain Imaging Meeting, Champery, Switzerland, January 22-26, 2006.

  19. 2005

  20. I. Khalidov, D. Van De Ville, M. Jacob, F. Lazeyras, M. Unser, "Magnetic Resonance Spectroscopy Imaging with Field Inhomogeneity Compensation," Proceedings of the 2005 Annual Meeting of the Swiss Society for Biomedical Engineering (SSBE'05), Lausanne VD, Switzerland, September 1-2, 2005, pp. F12.

Tutorials, Workshops, and Other Talks

    2007

  1. D. Van De Ville, "Surfing the brain: wavelet techniques for detecting evoked and intrinsic activity in fMRI", in School of Computer Science and Information Technology, University of Nottingham, Nottingham, UK, July 25th, 2007.
  2. M. Bach Cuadra, "Understanding human brain anatomy using MR imaging: registration, segmentation and fibre tracking", in School of Computer Science and Information Technology, University of Nottingham, Nottingham, UK, July 25th, 2007.
  3. D. Van De Ville, "Wavelets in neuro-imaging: applications to functional MRI", in Institute of Biomathematics and Biometry, GSF and Technical University of Munich, Munich, Germany, Jan 17, 2007.
  4. 2006

  5. D. Van De Ville, B. Forster, T. Blu, M. Unser, "Polyharmonic B-spline Wavelets: From Isotropy to Directionality," Plenary talk, Advanced Concepts for Intelligent Vision Systems (ACIVS'06), Antwerp (Belgium), September 18-21, 2006.
  6. D. Van De Ville, "Surfing the brain: multi-resolution analysis of coordinated stimulus responses," PENS Training Center - Imaging Brain Function: From Molecules to Mind, Chexbres (Switzerland), September, 2006
  7. D. Van De Ville, "Surfing the brain: wavelet-based statistical analysis of fMRI brain data", Talk at the Laboratoire des Images et des Signaux (LIS), Institut National Polytechnique de Grenoble, (Grenoble, France), February 16, 2006.

  8. 2005

  9. D. Van De Ville, T. Blu, M. Unser, "WSPM: A New Approach for Wavelet-Based Statistical Analysis of fMRI Data," Eleventh Annual Meeting of the Organization for Human Brain Mapping (HBM'05), in Morning workshop, Toronto (ON), Canada, June 12-16, 2005, pp. S17.
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